Resources

Datasets

People using an intracortical brain-computer interface simulator for cursor control: a comparison of neural decoding algorithms.

Citation: Alcolea, Pedro; Danziger, Zachary (2024). Less is more: selection from a small set of options improves BCI velocity control [Dataset]. Dryad. https://doi.org/10.5061/dryad.wh70rxwx6

Associated Publication: Alcolea P, Ma X, Bodkin K, Miller LE, Danziger ZC, “Less is more: selection from a small set of options improves BCI velocity control.” J. Neural Engineering DOI 10.1088/1741-2552/adbcd9

Associated Blog Post: https://scholarblogs.emory.edu/danziger/2024/06/07/more-success-with-less-control-in-bci-cursor-tasks/

Lower urinary tract filling and voiding experiments in vivo to test the effect of different infusion rates.

Citation: Jaskowak, Daniel, and Zachary C Danziger. “Reflex Voiding in Rat Occurs at Consistent Bladder Volume Regardless of Pressure or Infusion Rate.” SPARC Portal, 2023. https://doi.org/10.26275/JH8N-LWDL.

Associated Publication: Jaskowak, D. J. and Z. C. Danziger (2023). “Reflex voiding in rat occurs at consistent bladder volume regardless of pressure or infusion rate.” Neurourol Urodyn 2023; 42: 1532-1546.

Associated Blog Post: https://scholarblogs.emory.edu/danziger/2024/01/24/how-does-the-bladder-decide-when-to-pee/

Software

Simulate, manipulate, and explore a systems physiology model of the lower urinary tract without writing any code (app).

Citation: Nunez R, Alhajjar E, Jaskowak D, Danziger ZC, Giodoboni G, “Onset of Spontaneous Filling and Voiding Cycles in the Lower Urinary Tract: A Modeling Study.” Bulletin of Mathematical Biology, 86:122 2024.
doi: https://doi.org/10.1007/s11538-024-01320-1

Associated Blog Post: https://scholarblogs.emory.edu/danziger/2024/08/28/the-simple-as-possible-approach-to-lower-urinary-tract-simulation/

Simulate an entire network of simple spiking neurons in 1 or 2 lines of code.

Associated Blog Post: https://scholarblogs.emory.edu/danziger/2024/07/16/very-simple-simulation-of-very-simple-neurons/

Educational tool that lets you explore and manually tune the weights of a small neural network to solve classification tasks without writing any code (app).

It is a way to expose new learners to the basics of artificial neural network (MLP) design.

Algorithm for estimating residual volume in serial cystometry.

We call the algorithm that estimates Vu and VE the Automatic Monitoring for Efficient, Awake, Sensitive, Urine Residual Estimation algorithm, or AMEASURE. In the file archive you will get the MATLAB code to run the AMEASURE algorithm.

Citation: Angoli, D., et al. (2020). “Validation of an efficient and continuous urodynamic monitoring system for awake, unrestrained, chronic rodent studies.” Am J Physiol Renal Physiol 318(1): F86-F95. DOI: 10.1152/ajprenal.00349.2019

Associated Blog Post: https://scholarblogs.emory.edu/danziger/2023/12/07/how-much-pee-is-left-inside-techniques-for-basic-science-urology/