DataFerrett by the US Census Bureau
Data analysis and extraction tool that allows users to recode data and customize output.
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DataONE by NSF and partners 
Information on best practices for data and links for various data tools.
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DataUp by the CA Digital Library 
Open source tool to assist with data documentation and management.
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DMPTool by the University of CA Curation Center of the CA Digital Library: Tool to create data management plans for specific funding agencies.
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EndNote by Thomson Reuters: Software package to manage bibliographies. Visit http://health.library.emory.edu/collections/knowledge-management/endnote-support for more information.
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LaTeX by the LaTeX Project: Document preparation system. 
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QUOSA by QUOSA, Inc.: Literature management, sharing, and delivery system with text analytics. Click here for more information.